From the crime scene to the courtroom: the journey of a DNA sample

The O.J. Simpson murder trial in 1995 introduced DNA forensics to the public. The case collapsed, partly because the defence lawyers cast doubt on the validity of the evidence thanks to the inappropriate way the samples were handled.

Things have changed since then. There are now safeguards in place to ensure the integrity of the chain of evidence. Laboratory protocols and procedures have also advanced.

By following a piece of evidence from the crime scene to the courtroom, we’ll explain just how DNA is studied in the lab and used in the modern legal system.

Read more: Explainer: Forensic science

From the crime scene

The DNA sample’s journey begins at the crime scene.{%recommended 1001%} 

There are several principles that guide DNA evidence collection by the crime scene examiner. In particular, the avoidance of contamination or DNA degradation, and ensuring the chain of custody.

The risk of contamination (from the collector or other evidence samples) is reduced by using sterile, disposable supplies. Degradation is minimised by drying samples before bagging.

Storing dried samples in paper bags rather than plastic, and maintaining samples at the proper temperature helps preserve the DNA and prevent microbial contamination.

It is also important to plan what to collect and how – sufficient material may be required for independent testing by the defence.

To the lab

When any sample arrives in a lab, the first step is to extract the DNA.

The blood samples analysed in the O.J. Simpson trial were typical of the time when large amounts of DNA were required to conduct testing. Today, small amounts of DNA, known as trace DNA, can be analysed from items such as cigarette butts, hair follicles, saliva, semen, and even faeces.

This is possible because of the invention of a method in the 1980s called the polymerase chain reaction or “PCR”, which allows an individual strand of DNA to be replicated many times. This creates thousands of copies until there is enough DNA to conduct tests.

Analysis begins

The mainstay of modern DNA identification is short tandem repeat (STR) markers, which are small sections of DNA that vary by length (the number of repeats).{%recommended 4385%} 

Multiple STR markers are used to create a DNA profile. They are tested using commercial kits that often incorporate a sex determination test (the amelogenin gene).

Mitochondrial DNA

Another method uses mitochondrial DNA.

Mitochondrial DNA tends to last longer than other types of DNA and is often relied on in cold cases. The sequence of mitochondrial DNA “letters” is passed down from mother to child (with the exception of rare mutations), so mothers and grandmothers share the same DNA sequence as their children (but fathers do not).

This makes mitochondrial DNA useful in identifying missing persons – the bones of Daniel Morcombe were identified this way.

Read more Ned Kelly remains are positively identified … but how was it done?

The Y chromosome

The Y chromosome is present only in males and is passed from father to son. This makes Y chromosome STR markers a useful tool in situations such as sexual assault cases where male and female DNA samples might be mixed and the male suspect’s identity needs to be established.

In the same way as mitochondrial markers, Y-markers can be used for identification through family matching. The process of familial matching in criminal investigations raises privacy concerns but is increasingly commonplace.

In one recent incident, it was suggested that the surname of a suspect was identified from records of male family members in public genetic ancestry databases.

DNA databases and sample matching

Australian law enforcement uses the National Criminal Investigation DNA Database (NCIDD), which is managed by the Australian Criminal Intelligence Commission.

The more records added to the database, the greater the odds of making an accidental match. This is because the number of potential matches increases.

To reduce the risk of false “hits”, genetic profiles can be made more complex. Increasing the number of STRs in each profile reduces the risk of a spurious match because the probability of a match (at 20 markers, for example) is estimated by multiplying the probabilities of each STR marker.

The Australian system originally used nine STR’s and a sex-determination gene. In 2013 this was increased to 18 core markers.{%recommended 1266%} 

Internationally, there are moves towards a standard set of 24 markers (such as GlobalFiler). With this many markers, the odds of two people having the same profile (twins excepted) are incredibly small. This makes an STR profile a powerful way to exclude suspects as well as making matches.

In the courtroom

Modern DNA forensic methods are powerful and sensitive, but great care must be taken to prevent miscarriages of justice.

It is difficult for people to comprehend probabilities like one in a quadrillion, and the presentation of such numbers in court can become prejudicial.

In the case of Aytugrul v the Queen, DNA evidence was presented as an exclusion percentage of 99.9, and the defence argued that this would indicate certainty of guilt to the jury.

Although the High Court of Australia ultimately allowed the DNA evidence presentation in Aytugrul v the Queen, survey data suggest that the statistical presentation of genetic evidence may affect how it is understood and used by a jury.

Such issues have lead to guidelines by the US Department of Justice, among other justice groups, for the language used in forensic testimony and reports.

There’s also a risk that contamination might implicate an innocent person. For that reason, DNA evidence is best used in support of other types of evidence.

In the case of R v Jama, DNA evidence was the sole basis of the rape case. Only after 16 months’ imprisonment was it revealed that the sample taken by the doctor was probably contaminated.

Forensics in the future

DNA forensics will continue to evolve.

Take a genetic test that can predict eye and hair colour: this test examines (or “genotypes”) 24 single letter DNA variants. These are analysed with a statistical model that provides probabilities for hair and eye colour based on a large database that links DNA variants to appearance.

Understanding how DNA is linked to facial features has even led to the creation of DNA-based mugshots.

“Massively parallel” sequencing machines are also a significant advance. These can turn the approximately 3.2 billion DNA “letters” of the human genome into digital information in a matter of hours.

This opens up all of the information contained in our genetic code to law enforcement. For example, some researchers claim it’s possible to predict the age of a suspect from a blood sample within a mean error margin of 3.8 years, based on methylation markers in the DNA, and this may be improved with the assistance of machine learning.

The more we understand the link between appearance and DNA, the better its predictive power will be. It’s tempting to speculate how the O.J. Simpson trial may have turned out with modern forensic DNA protocols and technology.

Caitlin Curtis, Honorary Research Fellow, The University of Queensland and James Hereward, PostDoc Ecological and Evolutionary Genetics, The University of Queensland

This article was originally published on The Conversation and republished here with permission. Read the original article.